Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): a seasonal survey

Abstract

The importance of microbial diversity and their role in the maintenance of fish health in aquaculture systems has been increasingly recognized in recent years. However, there is still a major knowledge gap regarding the ecology, composition and dynamics of microbial plankton assemblages during fish production. In this study, we aimed to investigate the seasonal dynamics and potential interactions of bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture for European sea bass (Dicentrarchus labrax) cultured together with low density of gilthead sea bream (Sparus aurata) over a one-year period (January/2014 – November/2014). While the most abundant bacterial classes were Gammaproteobacteria, Flavobacteriia and Alphaproteobacteria; microeukaryotic communities were dominated by Ochrophyta, Chlorophyta and Ciliophora groups. Temperature and salinity were identified as significant drivers of the overall microbial community composition, which varied congruently along the seasons. However, while the dominant (more abundant) groups of bacteria occurred in the warmest months, the dominant groups of microeukaryotes occurred in the coldest months. There was also an inverse relationship between abundances of grazers and bacterial operational taxonomic units (OTUs). Overall, besides the potential effects of the abiotic parameters on the microbial plankton communities, the correlation between bacteria and microeukaryotic populations observed here may be an indication of trophic and/or metabolic interdependence between these two domains. Future studies should focus on the underlying mechanisms of this interdependence for a better understand of the impact of microeukaryotic communities on aquaculture bacterioplankton structure and function. In addition, this knowledge could be of interest in the development of microbial management strategies for aquaculture systems.