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Title: Detection and characterization of local inverted repeats regularities
Author: Bastos, Carlos A. C.
Afreixo, Vera
Rodrigues, João M. O. S.
Pinho, Armando J.
Keywords: Cruciform
Distance distribution
Inverted repeats
Periodic regularities
Issue Date: 2020
Publisher: Springer Verlag
Abstract: To explore the inverted repeats regularities along the genome sequences, we propose a sliding window method to extract the concentration scores of inverted repeats periodic regularities and the total mass of possible inverted repeats pairs. We apply the method to the human genome and locate the regions with the potential for the formation of large number of hairpin/cruciform structures. The number of found windows with periodic regularities is small and the patterns of occurrence are chromosome specific.
Peer review: yes
DOI: 10.1007/978-3-030-23873-5_14
ISBN: 978-3-030-23872-8
ISSN: 2194-5357
Appears in Collections:CIDMA - Capítulo de livro
DMat - Capítulo de livro
DETI - Capítulo de livro
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